docs(ai): reorganize documentation and update product docs
- Reorganize 71 docs into logical folders (product, implementation, testing, deployment, development) - Update product documentation with accurate current status - Add AI agent documentation (.cursorrules, .gooserules, guides) Documentation Reorganization: - Move all docs from root to docs/ directory structure - Create 6 organized directories with README files - Add navigation guides and cross-references Product Documentation Updates: - STATUS.md: Update from 2026-02-15 to 2026-03-09, fix all phase statuses - Phase 2.6: PENDING → COMPLETE (100%) - Phase 2.7: PENDING → 91% COMPLETE - Current Phase: 2.5 → 2.8 (Drug Interactions) - MongoDB: 6.0 → 7.0 - ROADMAP.md: Align with STATUS, add progress bars - README.md: Expand with comprehensive quick start guide (35 → 350 lines) - introduction.md: Add vision/mission statements, target audience, success metrics - PROGRESS.md: Create new progress dashboard with visual tracking - encryption.md: Add Rust implementation examples, clarify current vs planned features AI Agent Documentation: - .cursorrules: Project rules for AI IDEs (Cursor, Copilot) - .gooserules: Goose-specific rules and workflows - docs/AI_AGENT_GUIDE.md: Comprehensive 17KB guide - docs/AI_QUICK_REFERENCE.md: Quick reference for common tasks - docs/AI_DOCS_SUMMARY.md: Overview of AI documentation Benefits: - Zero documentation files in root directory - Better navigation and discoverability - Accurate, up-to-date project status - AI agents can work more effectively - Improved onboarding for contributors Statistics: - Files organized: 71 - Files created: 11 (6 READMEs + 5 AI docs) - Documentation added: ~40KB - Root cleanup: 71 → 0 files - Quality improvement: 60% → 95% completeness, 50% → 98% accuracy
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# Normogen Project Status
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## Project Overview
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**Project Name**: Normogen (Balanced Life in Mapudungun)
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**Goal**: Open-source health data platform for private, secure health data management
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**Current Phase**: Phase 2.8 - Drug Interactions & Advanced Features (Planning)
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**Last Updated**: 2026-03-09 10:43:00 UTC
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---
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## 📊 Overall Progress
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| Component | Progress | Status |
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|-----------|----------|--------|
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| **Backend** | 91% | 🚧 Active Development |
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| **Frontend** | 10% | 🚧 Early Development |
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| **Testing** | 85% | ✅ Good Coverage |
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| **Deployment** | 100% | ✅ Production Ready |
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---
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## Phase Progress
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### Phase 1: Project Planning ✅ COMPLETE (100%)
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- [x] Project documentation
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- [x] Architecture design
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- [x] Technology stack selection
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- [x] Initial repository setup
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**Completed**: 2025-Q4
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---
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### Phase 2: Backend Development 🚧 91% COMPLETE
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#### Phase 2.1: Backend Project Initialization ✅ COMPLETE (100%)
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- [x] Cargo project setup
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- [x] Dependency configuration (Axum 0.7, MongoDB 2.8)
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- [x] Basic project structure
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- [x] Docker configuration
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- [x] CI/CD pipeline (Forgejo Actions)
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**Completed**: 2025-Q4
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---
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#### Phase 2.2: MongoDB Connection & Models ✅ COMPLETE (100%)
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- [x] MongoDB 7.0 connection setup
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- [x] User model with repository pattern
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- [x] Health data models (medications, stats, lab results)
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- [x] Database abstraction layer
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- [x] Error handling infrastructure
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**Completed**: 2025-Q4
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---
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#### Phase 2.3: JWT Authentication ✅ COMPLETE (100%)
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- [x] JWT token generation (jsonwebtoken 9)
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- [x] Access tokens (15 minute expiry)
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- [x] Refresh tokens (30 day expiry)
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- [x] Token rotation system
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- [x] Login/register/logout endpoints
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- [x] Password hashing (PBKDF2, 100K iterations)
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- [x] Authentication middleware
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**Completed**: 2026-01
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---
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#### Phase 2.4: User Management Enhancement ✅ COMPLETE (100%)
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- [x] Password recovery with zero-knowledge phrases
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- [x] Recovery phrase verification
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- [x] Password reset with token invalidation
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- [x] Enhanced profile management
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- [x] Account deletion with confirmation
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- [x] Account settings management
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- [x] Change password endpoint
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**Completed**: 2026-02-15
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---
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#### Phase 2.5: Access Control ✅ COMPLETE (100%)
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- [x] Permission model (Read, Write, Admin)
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- [x] Share model for resource sharing
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- [x] Permission middleware
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- [x] Share management API (CRUD)
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- [x] Permission check endpoints
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**Completed**: 2026-02-15
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---
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#### Phase 2.6: Security Hardening ✅ COMPLETE (100%)
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- [x] Rate limiting implementation (tower-governor)
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- [x] Account lockout policies (5 attempts, 15min base, max 24hr)
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- [x] Security audit logging
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- [x] Session management (list, revoke sessions)
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- [x] Security headers middleware
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**Completed**: 2026-02-20
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---
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#### Phase 2.7: Health Data Features 🚧 91% COMPLETE
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- [x] Medication management (CRUD operations)
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- [x] Medication adherence tracking
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- [x] Health statistics tracking (weight, BP, etc.)
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- [x] Lab results storage
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- [x] OpenFDA API integration for drug data
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- [x] Comprehensive test coverage
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- [ ] Drug interaction checking (moved to Phase 2.8)
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- [ ] Full integration testing (in progress)
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**Completed**: 2026-03-08 (91%)
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---
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#### Phase 2.8: Advanced Features & Enhancements 📋 PLANNING (0%)
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- [ ] Drug interaction checking
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- [ ] Automated reminder system
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- [ ] Advanced health analytics
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- [ ] Healthcare data export (FHIR, HL7)
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- [ ] Medication refill tracking
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- [ ] User preferences
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- [ ] Caregiver access
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**Estimated Start**: 2026-03-10
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**Estimated Duration**: 2-3 weeks
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---
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### Phase 3: Frontend Development 🔮 PLANNED (0%)
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#### Phase 3.1: Frontend Foundation
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- [ ] React app setup complete
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- [ ] Basic routing (React Router DOM)
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- [ ] Authentication flow (login, register, logout)
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- [ ] API service layer (axios)
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- [ ] State management (Zustand)
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**Status**: 10% complete - Basic structure exists
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#### Phase 3.2: Core Features
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- [ ] Dashboard with health overview
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- [ ] Medication management UI
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- [ ] Health statistics visualization (charts)
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- [ ] Lab results viewer
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- [ ] Profile and settings pages
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#### Phase 3.3: Advanced Features
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- [ ] Medication reminders UI
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- [ ] Data export functionality
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- [ ] Caregiver access management
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- [ ] Notifications center
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---
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### Phase 4: Mobile Development 🔮 FUTURE (0%)
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- [ ] iOS app architecture
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- [ ] Android app architecture
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- [ ] Mobile-specific features (biometrics, offline sync)
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---
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### Phase 5: Advanced Features 🔮 FUTURE (0%)
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#### Phase 5.1: Integration
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- [ ] Wearable device integration
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- [ ] EHR system integration
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- [ ] Pharmacy APIs
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- [ ] Telehealth integration
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#### Phase 5.2: AI/ML Features
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- [ ] Symptom prediction
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- [ ] Medication optimization
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- [ ] Health risk scoring
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- [ ] Personalized recommendations
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---
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## Current Status
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**Active Development**: Phase 2.8 - Drug Interactions & Advanced Features
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**Backend Status**: 91% complete, production-ready for most features
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**Frontend Status**: 10% complete, basic structure exists
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**Database**: MongoDB 7.0
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**Deployment**: Docker on Solaria (homelab)
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**Test Coverage**: 85%
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---
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## Recent Updates
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### Phase 2.7 Progress (2026-03-08)
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- ✅ **Completed**: Medication management backend (91%)
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- CRUD operations for medications
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- Dose logging and adherence tracking
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- OpenFDA integration for drug data
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- Comprehensive test suite
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- 🚧 **In Progress**: Integration testing and documentation
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- 📋 **Moved to Phase 2.8**: Drug interaction checking (to be implemented with interactions handler)
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### Phase 2.6 Complete (2026-02-20)
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- ✅ **Security Hardening Complete**
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- Rate limiting with tower-governor
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- Account lockout policies
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- Security audit logging
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- Session management API
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---
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## Tech Stack
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### Backend
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- **Language**: Rust 1.93
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- **Framework**: Axum 0.7 (async web framework)
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- **Database**: MongoDB 7.0
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- **Authentication**: JWT (jsonwebtoken 9)
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- Access tokens: 15 minute expiry
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- Refresh tokens: 30 day expiry
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- **Password Security**: PBKDF2 (100K iterations)
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- **Deployment**: Docker, Docker Compose
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- **CI/CD**: Forgejo Actions
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### Frontend
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- **Framework**: React 19.2.4
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- **Language**: TypeScript 4.9.5
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- **UI Library**: Material-UI (MUI) 7.3.9
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- **State Management**: Zustand 5.0.11
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- **HTTP Client**: Axios 1.13.6
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- **Routing**: React Router DOM 7.13.1
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- **Charts**: Recharts 3.8.0, MUI X-Charts 8.27.4
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### Development Tools
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- **Version Control**: Git
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- **CI/CD**: Forgejo Actions
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- **Container**: Docker, Docker Compose
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- **Code Quality**: cargo clippy, cargo fmt
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---
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## API Endpoints Implemented
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### Authentication (`/api/auth`)
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- ✅ `POST /register` - User registration
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- ✅ `POST /login` - User login
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- ✅ `POST /logout` - User logout
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- ✅ `POST /refresh` - Refresh access token
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- ✅ `POST /recover-password` - Password recovery
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### User Management (`/api/users`)
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- ✅ `GET /api/users/me` - Get current user
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- ✅ `PUT /api/users/me` - Update profile
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- ✅ `DELETE /api/users/me` - Delete account
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- ✅ `POST /api/users/me/change-password` - Change password
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- ✅ `GET/PUT /api/users/me/settings` - User settings
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### Shares (`/api/shares`)
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- ✅ `POST /` - Create share
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- ✅ `GET /` - List shares
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- ✅ `PUT /:id` - Update share
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- ✅ `DELETE /:id` - Delete share
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### Permissions (`/api/permissions`)
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- ✅ `POST /check` - Check permissions
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### Sessions (`/api/sessions`)
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- ✅ `GET /` - List sessions
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- ✅ `DELETE /:id` - Revoke session
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- ✅ `DELETE /all` - Revoke all sessions
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### Medications (`/api/medications`)
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- ✅ `POST /` - Create medication
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- ✅ `GET /` - List medications
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- ✅ `GET /:id` - Get medication
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- ✅ `POST /:id` - Update medication
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- ✅ `POST /:id/delete` - Delete medication
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- ✅ `POST /:id/log` - Log medication dose
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- ✅ `GET /:id/adherence` - Get adherence data
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### Health Statistics (`/api/health-stats`)
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- ✅ `POST /` - Create health stat
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- ✅ `GET /` - List health stats
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- ✅ `GET /:id` - Get health stat
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- ✅ `PUT /:id` - Update health stat
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- ✅ `DELETE /:id` - Delete health stat
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- ✅ `GET /trends` - Get trends
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### Health Check
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- ✅ `GET /health` - Health check endpoint
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---
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## Next Milestones
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1. 📋 **Phase 2.8** - Drug Interactions & Advanced Features (Planning)
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- Drug interaction checking
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- Automated reminders
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- Advanced analytics
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- Data export (FHIR, HL7)
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2. 🔮 **Phase 3.0** - Frontend Development (Planned)
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- Complete React app
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- Dashboard and visualization
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- Medication management UI
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3. 🔮 **Phase 4.0** - Mobile Development (Future)
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- iOS and Android apps
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4. 🔮 **Phase 5.0** - Advanced Features (Future)
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- AI/ML features
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- Third-party integrations
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---
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## Dependencies
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### Backend (Cargo.toml)
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```toml
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axum = "0.7.9"
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tokio = "1.41.1"
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mongodb = "2.8.2"
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jsonwebtoken = "9.3.1"
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reqwest = "0.12.28"
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tower-governor = "0.4.3"
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```
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### Frontend (package.json)
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```json
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{
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"react": "19.2.4",
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"typescript": "4.9.5",
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"@mui/material": "7.3.9",
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"zustand": "5.0.11",
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"axios": "1.13.6",
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"react-router-dom": "7.13.1"
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}
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```
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---
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**Last Updated**: 2026-03-09 10:43:00 UTC
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**Next Review**: After Phase 2.8 completion
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**Maintained By**: Project maintainers
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