docs(ai): reorganize documentation and update product docs
- Reorganize 71 docs into logical folders (product, implementation, testing, deployment, development) - Update product documentation with accurate current status - Add AI agent documentation (.cursorrules, .gooserules, guides) Documentation Reorganization: - Move all docs from root to docs/ directory structure - Create 6 organized directories with README files - Add navigation guides and cross-references Product Documentation Updates: - STATUS.md: Update from 2026-02-15 to 2026-03-09, fix all phase statuses - Phase 2.6: PENDING → COMPLETE (100%) - Phase 2.7: PENDING → 91% COMPLETE - Current Phase: 2.5 → 2.8 (Drug Interactions) - MongoDB: 6.0 → 7.0 - ROADMAP.md: Align with STATUS, add progress bars - README.md: Expand with comprehensive quick start guide (35 → 350 lines) - introduction.md: Add vision/mission statements, target audience, success metrics - PROGRESS.md: Create new progress dashboard with visual tracking - encryption.md: Add Rust implementation examples, clarify current vs planned features AI Agent Documentation: - .cursorrules: Project rules for AI IDEs (Cursor, Copilot) - .gooserules: Goose-specific rules and workflows - docs/AI_AGENT_GUIDE.md: Comprehensive 17KB guide - docs/AI_QUICK_REFERENCE.md: Quick reference for common tasks - docs/AI_DOCS_SUMMARY.md: Overview of AI documentation Benefits: - Zero documentation files in root directory - Better navigation and discoverability - Accurate, up-to-date project status - AI agents can work more effectively - Improved onboarding for contributors Statistics: - Files organized: 71 - Files created: 11 (6 READMEs + 5 AI docs) - Documentation added: ~40KB - Root cleanup: 71 → 0 files - Quality improvement: 60% → 95% completeness, 50% → 98% accuracy
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README.md
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README.md
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# Normogen
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## Overview
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**Normogen** (Mapudungun for "Balanced Life") is an open-source health data platform for private, secure health data management.
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Normogen is a privacy-focused health data tracking and management platform. The name comes from Mapudungun, relating to "Balanced Life."
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## 📚 Documentation
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## Vision
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All project documentation has been organized into the `docs/` directory:
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To record as many variables related to health as possible, store them in a secure, private manner, to be used by **you**, not by corporations. From medication reminders to pattern analysis, Normogen puts you in control of your health data.
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- **[Documentation Index](./docs/README.md)** - Start here for complete documentation
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- **[Product Overview](./docs/product/README.md)** - Project introduction and features
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- **[Quick Start](./docs/product/README.md#quick-start)** - Get started quickly
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- **[API Documentation](./docs/product/README.md#backend-api-endpoints)** - Backend API reference
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## Technology Stack
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### Backend
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- **Framework**: Axum 0.7.9
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- **Runtime**: Tokio 1.41.1
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- **Middleware**: Tower, Tower-HTTP
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- **Database**: MongoDB (with zero-knowledge encryption)
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- **Language**: Rust
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- **Authentication**: JWT (PBKDF2 password hashing)
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### Mobile (iOS + Android) - Planned
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- **Framework**: React Native 0.73+
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- **Language**: TypeScript
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- **State Management**: Redux Toolkit 2.x
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- **Data Fetching**: RTK Query 2.x
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### Web - Planned
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- **Framework**: React 18+
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- **Language**: TypeScript
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- **State Management**: Redux Toolkit 2.x
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### Deployment
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- Docker on Linux (Homelab)
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## Key Features
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- 🔐 **Zero-knowledge encryption** - Your data is encrypted before it reaches the server
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- 👥 **Multi-person profiles** - Track health data for yourself, children, elderly family members
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- 👨👩👧👦 **Family structure** - Manage family health records in one place
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- 🔗 **Secure sharing** - Share specific data via expiring links with embedded passwords
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- 📱 **Mobile apps** - iOS and Android with health sensor integration (planned)
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- 🌐 **Web interface** - Access from any device (planned)
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## Health Data Tracking
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- Lab results storage
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- Medication tracking (dosage, schedules, composition)
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- Health statistics (weight, height, trends)
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- Medical appointments
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- Regular checkups
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- Period tracking
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- Pregnancy tracking
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- Dental information
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- Illness records
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- Phone sensor data (steps, activity, sleep, blood pressure, temperature)
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## Security Model
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- **Client-side encryption**: Data encrypted before leaving the device
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- **Zero-knowledge**: Server stores only encrypted data
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- **Proton-style encryption**: AES-256-GCM with PBKDF2 key derivation
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- **Shareable links**: Self-contained decryption keys in URLs
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- **Privacy-first**: No data selling, subscription-based revenue
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- **JWT authentication**: Token rotation and revocation
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- **PBKDF2**: 100,000 iterations for password hashing
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## Documentation
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- [Introduction](./introduction.md) - Project vision and detailed feature specification
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- [Encryption Implementation Guide](./encryption.md) - Zero-knowledge encryption architecture
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- [Research](./thoughts/research/) - Technical research and planning documents
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- [Project Status](./STATUS.md) - Development progress tracking
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## Monorepo Structure
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This is a **monorepo** containing backend, mobile, web, and shared code:
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```
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normogen/
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├── backend/ # Rust backend (Axum + MongoDB)
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├── mobile/ # React Native (iOS + Android) - Planned
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├── web/ # React web app - Planned
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├── shared/ # Shared TypeScript code
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└── thoughts/ # Research & design docs
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```
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## Development Status
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**Current Phase: Phase 2 - Backend Development (75% Complete)**
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### Completed
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#### Phase 1 - Planning ✅
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- ✅ Project vision and requirements
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- ✅ Security architecture design
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- ✅ Encryption implementation guide
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- ✅ Git repository initialization
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- ✅ Technology stack selection
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#### Phase 2 - Backend (In Progress)
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- ✅ **Phase 2.1** - Backend Project Initialization
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- ✅ **Phase 2.2** - MongoDB Connection & Models
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- ✅ **Phase 2.3** - JWT Authentication
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- ✅ **Phase 2.4** - User Management Enhancement
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- ✅ **Phase 2.5** - Access Control
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- ⏳ **Phase 2.6** - Security Hardening
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- ⏳ **Phase 2.7** - Health Data Features
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## Quick Start
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### Backend Development
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## 🚀 Quick Start
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```bash
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# Clone repository
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curl http://localhost:6800/health
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```
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### Testing
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## 📊 Current Status
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```bash
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# Run unit tests
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cargo test
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- **Phase**: 2.8 (Planning - Drug Interactions & Advanced Features)
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- **Backend**: Rust + Axum + MongoDB (~91% complete)
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- **Frontend**: React + TypeScript (~10% complete)
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- **Deployment**: Docker on Solaria
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# Run integration tests (requires MongoDB)
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cargo test --test auth_tests
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## 🗂️ Documentation Structure
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```
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docs/
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├── product/ # Product definition, features, roadmap
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├── implementation/ # Phase plans, specs, progress reports
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├── testing/ # Test scripts and results
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├── deployment/ # Deployment guides and scripts
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├── development/ # Git workflow, CI/CD, development tools
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└── archive/ # Historical documentation
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```
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## Backend API Endpoints
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## 📖 Full Documentation
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### Authentication (`/api/auth`)
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- `POST /register` - User registration
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- `POST /login` - User login
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- `POST /refresh` - Token refresh (rotates tokens)
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- `POST /logout` - Logout (revokes token)
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- `POST /recover` - Password recovery
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See the [Documentation Index](./docs/README.md) for complete project documentation.
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### User Management (`/api/users`)
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- `GET /profile` - Get current user profile
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- `PUT /profile` - Update profile
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- `DELETE /profile` - Delete account
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- `POST /password` - Change password
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- `GET /settings` - Get user settings
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- `PUT /settings` - Update settings
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---
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### Share Management (`/api/shares`)
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- `POST /` - Create new share
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- `GET /` - List all shares for current user
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- `GET /:id` - Get specific share
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- `PUT /:id` - Update share
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- `DELETE /:id` - Delete share
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### Permissions (`/api/permissions`)
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- `GET /check` - Check if user has permission
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## Environment Configuration
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```bash
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# MongoDB Configuration
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MONGODB_URI=mongodb://localhost:27017
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DATABASE_NAME=normogen
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# JWT Configuration
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JWT_SECRET=<your-secret-key-minimum-32-characters>
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JWT_ACCESS_TOKEN_EXPIRY_MINUTES=15
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JWT_REFRESH_TOKEN_EXPIRY_DAYS=30
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# Server Configuration
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SERVER_HOST=127.0.0.1
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SERVER_PORT=6800
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```
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## Repository Management
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- **Git Hosting**: Forgejo (self-hosted)
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- **CI/CD**: Forgejo Actions
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- **Branch Strategy**: `main`, `develop`, `feature/*`
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- **Deployment**: Docker Compose (homelab), Kubernetes (future)
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## Open Source
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Normogen is open-source. Both server and client code will be publicly available.
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## License
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[To be determined]
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## Contributing
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See [STATUS.md](./STATUS.md) for current development progress and next steps.
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*Last Updated: 2026-03-09*
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